Population genetic structure of the reaction between the long-term evolution of populations in the life cycle, mode of reproduction, natural selection, gene flow, genetic drift and mutations interactions. Therefore, the genetic structure of the Endangered Plants for the protection and development and utilization of germplasm resources are very important. In this study, the system UPGMA dendrogram, PCoA classification map and population genetic population structure analysis show that 17 Pterospermum natural population can be divided into I, II two clusters, where the cluster I may be subdivided into Ia, Ib, Ic and the other four subgroups Id, II cluster can be subdivided into IIa, IIb and IIc other three subgroups. But four subsets of cluster II, although the weak can be subdivided into four sub-groups, but the distribution is more concentrated among subsets, so we tend to Pterospermum divided into I, II cluster. While the non-uniform sampling, STUCTURE software may reduce the reliability of the calculation results, but three ways 17 Semiliquidambar divided natural population genetic structure basically the same, but there are subtle differences in the divided part of the sample, therefore, the present test conclusions more credible. It is noted that, although the RS and SW, SC populations are far away geographically, wherein the RS, respectively SW western and northern edges of the population, they are clustered into subsets lib together, and these three populations are in addition to SW It has a relatively high genetic diversity, which could be due to genetic RS and SW, SC may come from a common ancestor, despite the geographical distance between them very far. DH population and the eastern edge of Central DY, LA and LC and other three populations are also clustered together NJ subgroup Ib, southern and northeastern edges, ZN clustered together Ia. Have similar three geographic populations south WP, CT clustered together and YD IIc, central SX, QL, and YP also other three populations with polyethylene adjacent to Id. Clustering can be seen there is a certain correlation with a geographic location, but not significantly, while detecting Mantel (r = 0.068, P = 0.350 ) but also showed Pterospermum between genetic distance and geographical distance no significant correlation. The study also showed that the majority of self-incompatibility exists between the semi-maple natural population <br>genetic differences moderate or high levels, indicating that Pterospermum the development of high value in use, such as breeding to meet market demand ornamental Pterospermum stable varieties and breeding high content of medicinal ingredients Pterospermum varieties.
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